stock report

Drosophila gene expression annotation

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Stock report for CPTI-000560 Click on the arrows to expand the information panels

Element name:	CPTI-000560	Derived from:	none	Line ID:	1
Donor:	602.9a (Males)	Construct:	PIGP3{SVS-1}	Lethality:	viable
YFP expression?	Yes	Balancer:	SM6a	Chromosome:	2
Eye colour:	yellow	COPAS exp no.	40	COPAS plate	8:0
Sent?	Yes (batch 4)	Stock status?	Kept	Seq plate:	136 142 146

Notes:

Sequencing Information

Scaffold:	3291352	Map location:	43B2	Chromosome:	2R
End mapped:	3	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG11166	CG11166	3285729	3295326	-1	2R	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG11166-RA	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RB	intron	intron_CG11166:13_CG11166:3	Yes	No	Yes
CG11166-RC	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RD	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RE	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RF	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RG	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes

Scaffold:	3291347	Map location:	43B2	Chromosome:	2R
End mapped:	5	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG11166	CG11166	3285729	3295326	-1	2R	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG11166-RA	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RB	intron	intron_CG11166:13_CG11166:3	Yes	No	Yes
CG11166-RC	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RD	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RE	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RF	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes
CG11166-RG	intron	intron_CG11166:2_CG11166:3	Yes	No	Yes

File: 2006_12_18_560_sort_sw.jpg
Sorted: 126 / 786 (16.03 %)

All annotation data

Expression reports

Stage	Tissue type	Annotator	ImagesCompare images Merge images	Annotation
embryonic stage 4	embryonic integumentary system (Live or non-fixed prep)	Bloor Lab: James Bloor		embryonic epidermis nucleus
embryonic stage 5	whole organism (Live or non-fixed prep)	Bloor Lab: James Bloor		amnioserosa nucleus punctate
embryonic stage 5	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism nucleus
embryonic stage 11	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous
third instar larval stage	larval salivary gland (Live or non-fixed prep)	Cambridge Genetics: Rob White		larval salivary gland nucleus nucleoplasm
third instar larval stage	whole organism (Live or non-fixed prep)	Gould Lab: Alex Gould
third instar larval stage	whole organism (Live or non-fixed prep)	Roberts Lab: Roger Guy Phillips		larval esophagus larval proventriculus larval salivary gland
third instar larval stage	larval central nervous system (Live or non-fixed prep)	Brand Lab: Andrea Brand		larval central nervous system
adult stage	male reproductive system (Live or non-fixed prep)	White-Cooper Lab: Helen White-Cooper		primary spermatocyte nucleus restricted punctate
adult stage	adult brain (Fixed tissue prep)	Armstrong Lab: Seymour Knowles-Barley		cerebral cortex
adult stage	whole organism (Live or non-fixed prep)	Kyriacou & Rosato Labs: Renata Azevedo & Celia Hansen
late embryonic stage	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous NOT uniform epidermis salivary gland

No expression reports

Stage	Tissue type	Annotator
embryonic stage 3	whole organism (Live or non-fixed prep)	Sanson Lab
embryonic stage 6	whole organism (Live or non-fixed prep)	Sanson Lab
embryonic stage 7	whole organism (Live or non-fixed prep)	Sanson Lab
embryonic stage 8	whole organism (Live or non-fixed prep)	Sanson Lab
embryonic stage 9	whole organism (Live or non-fixed prep)	Sanson Lab
embryonic stage 13	whole organism (Live or non-fixed prep)	Sanson Lab
third instar larval stage	imaginal precursor (Unknown prep method)	David Gubb
third instar larval stage	larval central nervous system (Live or non-fixed prep)	Cahir O Kane
third instar larval stage	larval circulatory system (Live or non-fixed prep)	Ana Maria Valles
adult stage	female reproductive system (Unknown prep method)	Becky and Maarten
adult stage	whole organism (Unknown prep method)	Hanneke Okkenhaug
adult stage	whole organism (Unknown prep method)	David Huen
adult stage	adult brain (Fixed tissue prep)	Renata Azevedo & Celia Hansen

salivary cortex system nervous cerebral gland proventriculus spermatocyte central epidermis primary larval organism whole esophagus

Stocks with similar clouds

CPTI-000736 | CPTI-000616 | CPTI-100051 | CPTI-000883 | CPTI-001029 | CPTI-001053 | CPTI-000218 | CPTI-000798 |