stock report

Drosophila gene expression annotation

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Stock report for CPTI-100039 Click on the arrows to expand the information panels

Element name:	CPTI-100039	Derived from:	none	Line ID:	1
Donor:	544 KH3.1B (Males)	Construct:	PBac{SVS-1}	Lethality:	viable
YFP expression?	Yes	Balancer:	SM6a	Chromosome:	2
Eye colour:	----	COPAS exp no.	0	COPAS plate	1:0
Sent?	Yes (batch 2)	Stock status?	Kept	Seq plate:	144 PB-GFP-1 PB-GFP-5

Notes:

Sequencing Information

Scaffold:	15066912	Map location:	35C1	Chromosome:	2L
End mapped:	5	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3506	vas	15061656	15074311	1	2L	info
CG4170	vig	15064198	15070316	-1	2L	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3506-RA	intron	intron_CG3506:1_CG3506:2	No	-	-	-
CG4170-RA	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RB	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RC	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RD	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes

Scaffold:	15066917	Map location:	35C1	Chromosome:	2L
End mapped:	3	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3506	vas	15061656	15074311	1	2L	info
CG4170	vig	15064198	15070316	-1	2L	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3506-RA	intron	intron_CG3506:1_CG3506:2	No	-	-	-
CG4170-RA	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RB	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RC	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RD	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes

Scaffold:	15066912	Map location:	35C1	Chromosome:	2L
End mapped:	5	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3506	vas	15061656	15074311	1	2L	info
CG4170	vig	15064198	15070316	-1	2L	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3506-RA	intron	intron_CG3506:1_CG3506:2	No	-	-	-
CG4170-RA	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RB	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RC	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes
CG4170-RD	intron	intron_CG4170:2_CG4170:3	Yes	No	Yes

File: 2007_07_24_100039_sort_sw.jpg
Sorted: 141 / 314 (44.9 %)

Interaction data

STREPII

FLAG

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All annotation data

Expression reports

Stage	Tissue type	Annotator	ImagesCompare images Merge images	Annotation
embryonic stage 5	embryonic muscle system (Live or non-fixed prep)	Taylor Lab: Michael V. Taylor		embryonic muscle system
embryonic stage 5	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism cytoplasm
embryonic stage 6	embryonic muscle system (Live or non-fixed prep)	Taylor Lab: Michael V. Taylor		embryonic muscle system
embryonic stage 7	embryonic muscle system (Live or non-fixed prep)	Taylor Lab: Michael V. Taylor		embryonic muscle system
embryonic stage 8	embryonic muscle system (Live or non-fixed prep)	Taylor Lab: Michael V. Taylor		embryonic muscle system
embryonic stage 11	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous
first instar larval stage	larval muscle system (Live or non-fixed prep)	Brown lab: Sven Huelsmann		larval somatic muscle cytoplasm larval epidermis cytoplasm
third instar larval stage	larval salivary gland (Live or non-fixed prep)	Cambridge Genetics: Rob White		larval salivary gland cytoplasm
third instar larval stage	whole organism (Live or non-fixed prep)	Roberts Lab: Roger Guy Phillips		larval brain larval esophagus larval salivary gland larval ventral ganglion antennal disc eye disc dorsal mesothoracic disc ventral thoracic disc
third instar larval stage	whole organism (Live or non-fixed prep)	Gould Lab: Alex Gould		larval fat body imaginal disc larval central nervous system
adult stage	male reproductive system (Live or non-fixed prep)	White-Cooper Lab: Helen White-Cooper		testis sheath
adult stage	female reproductive system (Live or non-fixed prep)	St Johnston Lab: Becky and Maarten		follicle cell cytoplasm uniform
adult stage	female reproductive system (Live or non-fixed prep)	St Johnston Lab: Kate and Eurico		follicle cell cytoplasm
adult stage	adult brain (Fixed tissue prep)	Armstrong Lab: Seymour Knowles-Barley		cerebral cortex
adult stage	adult brain (Fixed tissue prep)	Stanewsky Lab: Ralf Stanewsky
adult stage	adult brain (Fixed tissue prep)	Kyriacou & Rosato Labs: Renata Azevedo & Celia Hansen		adult head
adult stage	whole organism (Live or non-fixed prep)	Kyriacou & Rosato Labs: Renata Azevedo & Celia Hansen
late embryonic stage	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous NOT uniform muscle fiber

No expression reports

Stage	Tissue type	Annotator
embryonic stage 4	embryonic integumentary system (Live or non-fixed prep)	James Bloor
embryonic stage 4	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 5	embryonic integumentary system (Live or non-fixed prep)	James Bloor
embryonic stage 5	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 6	embryonic integumentary system (Live or non-fixed prep)	James Bloor
embryonic stage 6	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 15	central nervous system (Live or non-fixed prep)	Guy Tear
third instar larval stage	imaginal precursor (Live or non-fixed prep)	David Gubb
third instar larval stage	larval central nervous system (Live or non-fixed prep)	Andrea Brand
adult stage	whole organism (Unknown prep method)	Hanneke Okkenhaug
adult stage	whole organism (Live or non-fixed prep)	David Huen
late extended germ band stage	central nervous system (Live or non-fixed prep)	Guy Tear
dorsal closure stage	central nervous system (Live or non-fixed prep)	Guy Tear

disc ventral thoracic salivary mesothoracic gland cell embryonic whole system muscle dorsal organism larval follicle

Stocks with similar clouds

CPTI-100036 | CPTI-000106 | CPTI-000833 | CPTI-100065 | CPTI-000365 | CPTI-000633 | CPTI-000657 | CPTI-000688 |