stock report

Drosophila gene expression annotation

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Stock report for CPTI-100041 Click on the arrows to expand the information panels

Element name:	CPTI-100041	Derived from:	none	Line ID:	1
Donor:	544 KH3.1B (Males)	Construct:	PBac{SVS-1}	Lethality:	viable
YFP expression?	Yes	Balancer:	SM6a	Chromosome:	2
Eye colour:	----	COPAS exp no.	0	COPAS plate	1:0
Sent?	Yes (batch 2)	Stock status?	Kept	Seq plate:	130 144 PB-GFP-1

Notes:

female fertile

Sequencing Information

Scaffold:	2519526	Map location:	42C1	Chromosome:	2R
End mapped:	3	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3161	Vha16	2514418	2520633	-1	2R	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3161-RA	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RB	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RC	intron	intron_CG3161:6_CG3161:3	Yes	No	Yes
CG3161-RD	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes

Scaffold:	2519526	Map location:	42C1	Chromosome:	2R
End mapped:	3	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3161	Vha16	2514418	2520633	-1	2R	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3161-RA	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RB	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RC	intron	intron_CG3161:6_CG3161:3	Yes	No	Yes
CG3161-RD	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes

Scaffold:	2519521	Map location:	42C1	Chromosome:	2R
End mapped:	5	Element orientation:	plus	YFP orientation:	minus

Gene insertions

Gene ID	Gene Name	Start	Stop	Strand	Chr	GO Terms	Links
CG3161	Vha16	2514418	2520633	-1	2R	info

Transcript and frame information

Transcript ID	Feature	Feature ID	Correct orient?	In a UTR?	Correct frame?
CG3161-RA	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RB	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes
CG3161-RC	intron	intron_CG3161:6_CG3161:3	Yes	No	Yes
CG3161-RD	intron	intron_CG3161:2_CG3161:3	Yes	No	Yes

	File: 2007_07_26_100041_1024_sort_sw.jpg Sorted: No record
	File: 2007_07_26_100041_sort_sw.jpg Sorted: 419 / 551 (76.04 %)

Interaction data

STREPII

FLAG

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All annotation data

Expression reports

Stage	Tissue type	Annotator	ImagesCompare images Merge images	Annotation
embryonic stage 5	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism cytoplasm apical
embryonic stage 6	embryonic integumentary system (Live or non-fixed prep)	Bloor Lab: James Bloor		embryonic epidermis cytoplasm granular
embryonic stage 11	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous
first instar larval stage	larval muscle system (Live or non-fixed prep)	Brown lab: Sven Huelsmann		larval somatic muscle cytoplasm larval epidermis cytoplasm
third instar larval stage	whole organism (Live or non-fixed prep)	Gould Lab: Alex Gould		larval Malpighian tubule larval midgut larval anal pad
third instar larval stage	larval salivary gland (Live or non-fixed prep)	Cambridge Genetics: Rob White
third instar larval stage	male reproductive system (Live or non-fixed prep)	guest: David Gubb		third instar larva male reproductive system
third instar larval stage	larval circulatory system (Live or non-fixed prep)	Ilan Davis lab: Ana Maria Valles		larval circulatory system cell cytoplasm central punctate
adult stage	male reproductive system (Live or non-fixed prep)	White-Cooper Lab: Helen White-Cooper		cytoplasm cyst cell
adult stage	whole organism (Live or non-fixed prep)	Cambridge Genetics: David Huen		adult external abdomen
adult stage	female reproductive system (Live or non-fixed prep)	St Johnston Lab: Becky and Maarten		follicle cell cytoplasm apical granular
adult stage	female reproductive system (Live or non-fixed prep)	St Johnston Lab: Kate and Eurico		follicle cell cytoplasm
adult stage	adult brain (Fixed tissue prep)	Armstrong Lab: Seymour Knowles-Barley		cerebral cortex
adult stage	whole organism (Live or non-fixed prep)	Kyriacou & Rosato Labs: Renata Azevedo & Celia Hansen
late embryonic stage	whole organism (Live or non-fixed prep)	Sanson Lab: Sanson Lab		whole organism ubiquitous

No expression reports

Stage	Tissue type	Annotator
embryonic stage 4	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 5	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 6	whole organism (Live or non-fixed prep)	James Bloor
embryonic stage 8	peripheral nervous system (Fixed tissue prep)	Andrew Jarman
embryonic stage 9	peripheral nervous system (Fixed tissue prep)	Andrew Jarman
third instar larval stage	larval central nervous system (Live or non-fixed prep)	Andrea Brand
third instar larval stage	imaginal precursor (Live or non-fixed prep)	Sarah Bray
adult stage	whole organism (Unknown prep method)	Hanneke Okkenhaug
adult stage	peripheral nervous system (Fixed tissue prep)	Andrew Jarman
adult stage	adult brain (Fixed tissue prep)	Ralf Stanewsky
adult stage	adult brain (Fixed tissue prep)	Renata Azevedo & Celia Hansen

whole adult epidermis instar muscle somatic third organism cyst larval pad system follicle cortex cell

Stocks with similar clouds

CPTI-000299 | CPTI-000743 | CPTI-100067 | CPTI-100001 | CPTI-000056 | CPTI-001015 | CPTI-100026 | CPTI-100051 |